parm rhomean rhomode sesand sehess seinfo 1 0.073629 0.074219 0.038904 0.023342 0.018602 2 0.038463 0.035156 0.038353 0.028027 0.021991 3 0.10046 0.089844 0.34681 0.0998 0.031932 4 0.93773 0.93848 0.057194 0.019128 0.0073772 5 0.1797 0.18066 0.060547 0.018292 0.0062858 6 0.11496 0.10156 0.15915 0.085943 0.049513 The log posterior (log prior - objfun) at the mode is -8.7582. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta. The degrees of freedom for seinfo are 138.