parm rhomean rhomode sesand sehess seinfo 1 0.067607 0.066406 0.050724 0.024602 0.016327 2 0.036087 0.035156 0.045023 0.02855 0.019496 3 0.09738 0.097656 0.35447 0.10278 0.031429 4 0.93709 0.94043 0.084856 0.024527 0.0074098 5 0.18006 0.18066 0.061486 0.019274 0.0066115 6 0.12418 0.11719 0.18276 0.0857 0.041443 The log posterior (log prior - objfun) at the mode is -8.6733. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta. The degrees of freedom for seinfo are 533.