parm rhomean rhomode sesand sehess seinfo 1 0.077352 0.087784 0.027554 2 0.031089 0.033527 0.030951 3 0.065395 0.040916 0.114 4 0.81773 0.92318 0.19868 5 0.18748 0.19309 0.049312 6 0.036303 0.12959 0.10187 The log posterior (log prior - objfun) at the mode is -8.8976. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.