parm rhomean rhomode sesand sehess seinfo 1 -0.043904 -0.0063494 0.026983 2 0.071244 0.09202 0.024619 3 0.79287 0.44681 0.21011 4 0.24627 0.26746 0.064487 5 0.024096 0.0075307 0.018278 6 -0.1398 -0.25341 0.10289 The log posterior (log prior - objfun) at the mode is -46.07. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.